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481 | import logging
import socket
import os
import sys
import time
import traceback
try:
from queue import Queue
except ImportError: # Python 2.7 fix
from Queue import Queue
from threading import Thread
from tlz import merge
from tornado import gen
logger = logging.getLogger(__name__)
# These are handy for creating colorful terminal output to enhance readability
# of the output generated by dask-ssh.
class bcolors:
HEADER = "\033[95m"
OKBLUE = "\033[94m"
OKGREEN = "\033[92m"
WARNING = "\033[93m"
FAIL = "\033[91m"
ENDC = "\033[0m"
BOLD = "\033[1m"
UNDERLINE = "\033[4m"
def async_ssh(cmd_dict):
import paramiko
from paramiko.buffered_pipe import PipeTimeout
from paramiko.ssh_exception import SSHException, PasswordRequiredException
ssh = paramiko.SSHClient()
ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy())
retries = 0
while True: # Be robust to transient SSH failures.
try:
# Set paramiko logging to WARN or higher to squelch INFO messages.
logging.getLogger("paramiko").setLevel(logging.WARN)
ssh.connect(
hostname=cmd_dict["address"],
username=cmd_dict["ssh_username"],
port=cmd_dict["ssh_port"],
key_filename=cmd_dict["ssh_private_key"],
compress=True,
timeout=20,
banner_timeout=20,
) # Helps prevent timeouts when many concurrent ssh connections are opened.
# Connection successful, break out of while loop
break
except (SSHException, PasswordRequiredException) as e:
print(
"[ dask-ssh ] : "
+ bcolors.FAIL
+ "SSH connection error when connecting to {addr}:{port}"
"to run '{cmd}'".format(
addr=cmd_dict["address"],
port=cmd_dict["ssh_port"],
cmd=cmd_dict["cmd"],
)
+ bcolors.ENDC
)
print(
bcolors.FAIL
+ " SSH reported this exception: "
+ str(e)
+ bcolors.ENDC
)
# Print an exception traceback
traceback.print_exc()
# Transient SSH errors can occur when many SSH connections are
# simultaneously opened to the same server. This makes a few
# attempts to retry.
retries += 1
if retries >= 3:
print(
"[ dask-ssh ] : "
+ bcolors.FAIL
+ "SSH connection failed after 3 retries. Exiting."
+ bcolors.ENDC
)
# Connection failed after multiple attempts. Terminate this thread.
os._exit(1)
# Wait a moment before retrying
print(
" "
+ bcolors.FAIL
+ "Retrying... (attempt {n}/{total})".format(n=retries, total=3)
+ bcolors.ENDC
)
time.sleep(1)
# Execute the command, and grab file handles for stdout and stderr. Note
# that we run the command using the user's default shell, but force it to
# run in an interactive login shell, which hopefully ensures that all of the
# user's normal environment variables (via the dot files) have been loaded
# before the command is run. This should help to ensure that important
# aspects of the environment like PATH and PYTHONPATH are configured.
print("[ {label} ] : {cmd}".format(label=cmd_dict["label"], cmd=cmd_dict["cmd"]))
stdin, stdout, stderr = ssh.exec_command(
"$SHELL -i -c '" + cmd_dict["cmd"] + "'", get_pty=True
)
# Set up channel timeout (which we rely on below to make readline() non-blocking)
channel = stdout.channel
channel.settimeout(0.1)
def read_from_stdout():
"""
Read stdout stream, time out if necessary.
"""
try:
line = stdout.readline()
while len(line) > 0: # Loops until a timeout exception occurs
line = line.rstrip()
logger.debug("stdout from ssh channel: %s", line)
cmd_dict["output_queue"].put(
"[ {label} ] : {output}".format(
label=cmd_dict["label"], output=line
)
)
line = stdout.readline()
except (PipeTimeout, socket.timeout):
pass
def read_from_stderr():
"""
Read stderr stream, time out if necessary.
"""
try:
line = stderr.readline()
while len(line) > 0:
line = line.rstrip()
logger.debug("stderr from ssh channel: %s", line)
cmd_dict["output_queue"].put(
"[ {label} ] : ".format(label=cmd_dict["label"])
+ bcolors.FAIL
+ "{output}".format(output=line)
+ bcolors.ENDC
)
line = stderr.readline()
except (PipeTimeout, socket.timeout):
pass
def communicate():
"""
Communicate a little bit, without blocking too long.
Return True if the command ended.
"""
read_from_stdout()
read_from_stderr()
# Check to see if the process has exited. If it has, we let this thread
# terminate.
if channel.exit_status_ready():
exit_status = channel.recv_exit_status()
cmd_dict["output_queue"].put(
"[ {label} ] : ".format(label=cmd_dict["label"])
+ bcolors.FAIL
+ "remote process exited with exit status "
+ str(exit_status)
+ bcolors.ENDC
)
return True
# Get transport to current SSH client
transport = ssh.get_transport()
# Wait for a message on the input_queue. Any message received signals this
# thread to shut itself down.
while cmd_dict["input_queue"].empty():
# Kill some time so that this thread does not hog the CPU.
time.sleep(1.0)
# Send noise down the pipe to keep connection active
transport.send_ignore()
if communicate():
break
# Ctrl-C the executing command and wait a bit for command to end cleanly
start = time.time()
while time.time() < start + 5.0:
channel.send(b"\x03") # Ctrl-C
if communicate():
break
time.sleep(1.0)
# Shutdown the channel, and close the SSH connection
channel.close()
ssh.close()
def start_scheduler(
logdir, addr, port, ssh_username, ssh_port, ssh_private_key, remote_python=None
):
cmd = "{python} -m distributed.cli.dask_scheduler --port {port}".format(
python=remote_python or sys.executable, port=port
)
# Optionally re-direct stdout and stderr to a logfile
if logdir is not None:
cmd = "mkdir -p {logdir} && ".format(logdir=logdir) + cmd
cmd += "&> {logdir}/dask_scheduler_{addr}:{port}.log".format(
addr=addr, port=port, logdir=logdir
)
# Format output labels we can prepend to each line of output, and create
# a 'status' key to keep track of jobs that terminate prematurely.
label = (
bcolors.BOLD
+ "scheduler {addr}:{port}".format(addr=addr, port=port)
+ bcolors.ENDC
)
# Create a command dictionary, which contains everything we need to run and
# interact with this command.
input_queue = Queue()
output_queue = Queue()
cmd_dict = {
"cmd": cmd,
"label": label,
"address": addr,
"port": port,
"input_queue": input_queue,
"output_queue": output_queue,
"ssh_username": ssh_username,
"ssh_port": ssh_port,
"ssh_private_key": ssh_private_key,
}
# Start the thread
thread = Thread(target=async_ssh, args=[cmd_dict])
thread.daemon = True
thread.start()
return merge(cmd_dict, {"thread": thread})
def start_worker(
logdir,
scheduler_addr,
scheduler_port,
worker_addr,
nthreads,
nprocs,
ssh_username,
ssh_port,
ssh_private_key,
nohost,
memory_limit,
worker_port,
nanny_port,
remote_python=None,
remote_dask_worker="distributed.cli.dask_worker",
local_directory=None,
):
cmd = (
"{python} -m {remote_dask_worker} "
"{scheduler_addr}:{scheduler_port} "
"--nthreads {nthreads}" + (" --nprocs {nprocs}" if nprocs != 1 else "")
)
if not nohost:
cmd += " --host {worker_addr}"
if memory_limit:
cmd += " --memory-limit {memory_limit}"
if worker_port:
cmd += " --worker-port {worker_port}"
if nanny_port:
cmd += " --nanny-port {nanny_port}"
cmd = cmd.format(
python=remote_python or sys.executable,
remote_dask_worker=remote_dask_worker,
scheduler_addr=scheduler_addr,
scheduler_port=scheduler_port,
worker_addr=worker_addr,
nthreads=nthreads,
nprocs=nprocs,
memory_limit=memory_limit,
worker_port=worker_port,
nanny_port=nanny_port,
)
if local_directory is not None:
cmd += " --local-directory {local_directory}".format(
local_directory=local_directory
)
# Optionally redirect stdout and stderr to a logfile
if logdir is not None:
cmd = "mkdir -p {logdir} && ".format(logdir=logdir) + cmd
cmd += "&> {logdir}/dask_scheduler_{addr}.log".format(
addr=worker_addr, logdir=logdir
)
label = "worker {addr}".format(addr=worker_addr)
# Create a command dictionary, which contains everything we need to run and
# interact with this command.
input_queue = Queue()
output_queue = Queue()
cmd_dict = {
"cmd": cmd,
"label": label,
"address": worker_addr,
"input_queue": input_queue,
"output_queue": output_queue,
"ssh_username": ssh_username,
"ssh_port": ssh_port,
"ssh_private_key": ssh_private_key,
}
# Start the thread
thread = Thread(target=async_ssh, args=[cmd_dict])
thread.daemon = True
thread.start()
return merge(cmd_dict, {"thread": thread})
class SSHCluster:
def __init__(
self,
scheduler_addr,
scheduler_port,
worker_addrs,
nthreads=0,
nprocs=1,
ssh_username=None,
ssh_port=22,
ssh_private_key=None,
nohost=False,
logdir=None,
remote_python=None,
memory_limit=None,
worker_port=None,
nanny_port=None,
remote_dask_worker="distributed.cli.dask_worker",
local_directory=None,
):
self.scheduler_addr = scheduler_addr
self.scheduler_port = scheduler_port
self.nthreads = nthreads
self.nprocs = nprocs
self.ssh_username = ssh_username
self.ssh_port = ssh_port
self.ssh_private_key = ssh_private_key
self.nohost = nohost
self.remote_python = remote_python
self.memory_limit = memory_limit
self.worker_port = worker_port
self.nanny_port = nanny_port
self.remote_dask_worker = remote_dask_worker
self.local_directory = local_directory
# Generate a universal timestamp to use for log files
import datetime
if logdir is not None:
logdir = os.path.join(
logdir,
"dask-ssh_" + datetime.datetime.now().strftime("%Y-%m-%d_%H:%M:%S"),
)
print(
bcolors.WARNING + "Output will be redirected to logfiles "
'stored locally on individual worker nodes under "{logdir}".'.format(
logdir=logdir
)
+ bcolors.ENDC
)
self.logdir = logdir
# Keep track of all running threads
self.threads = []
# Start the scheduler node
self.scheduler = start_scheduler(
logdir,
scheduler_addr,
scheduler_port,
ssh_username,
ssh_port,
ssh_private_key,
remote_python,
)
# Start worker nodes
self.workers = []
for i, addr in enumerate(worker_addrs):
self.add_worker(addr)
@gen.coroutine
def _start(self):
pass
@property
def scheduler_address(self):
return "%s:%d" % (self.scheduler_addr, self.scheduler_port)
def monitor_remote_processes(self):
# Form a list containing all processes, since we treat them equally from here on out.
all_processes = [self.scheduler] + self.workers
try:
while True:
for process in all_processes:
while not process["output_queue"].empty():
print(process["output_queue"].get())
# Kill some time and free up CPU before starting the next sweep
# through the processes.
time.sleep(0.1)
# end while true
except KeyboardInterrupt:
pass # Return execution to the calling process
def add_worker(self, address):
self.workers.append(
start_worker(
self.logdir,
self.scheduler_addr,
self.scheduler_port,
address,
self.nthreads,
self.nprocs,
self.ssh_username,
self.ssh_port,
self.ssh_private_key,
self.nohost,
self.memory_limit,
self.worker_port,
self.nanny_port,
self.remote_python,
self.remote_dask_worker,
self.local_directory,
)
)
def shutdown(self):
all_processes = [self.scheduler] + self.workers
for process in all_processes:
process["input_queue"].put("shutdown")
process["thread"].join()
def __enter__(self):
return self
def __exit__(self, *args):
self.shutdown()
|